Annotation of 12 chromosomes Chr 1: Chr 2: Chr 3: Chr 4: Chr 5: Chr 6: Chr 7: Chr 8: Chr 9: Chr10: Chr11: Chr12:

Rice Annotation Database RAD is a contig-oriented database for high-quality manual annotation of RGP, which can present non-redundant contig analyses by merging the accumulated PAC/BAC clones. As of October 2004, the database contains a total of 215 Mb sequence with relevant annotation results (30000 predicted genes.) The database can provide the latest information on manual annotation as well as a comprehensive structural analysis of various features of the rice genome. Note that the annotation data of chromosomes 1, 3, 4 and 10 are restored from flat files of the public database. These basically contain the predicted genes information but not contain their evidence information. Japanese vers. Help Publication

Search for Clone search Gene search HELP Advanced search View Analysis Link 1.Introduction 2.PCA (Pac Contig Annotation) 3.Overlap information 4.Annotation coverage 5.CHR8 CENTROMERE REGION General statistics(Average,GC+) Splice site analysis Amino usage analysis Codon usage analysis Compositional analysis at 1st, 2nd, 3rd codon Gene length distribution Chromosome statistics(published data) Gene ontology annotation Functional classification based on a criterion of MIPS RGP IRGSP DNA bank INE NCBI DDBJ

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The development of this database was supported by a grant from the Ministry of Agriculture, Forestry and Fisheries of Japan (Rice Genome Project SY-1102). Please address comment and requests to webmaster@staff.or.jp Rice Genome Research Program Institute of the Society for Techno-innovation of Agriculture, Forestry and Fisheries 446-1 Ippaizuka, Kamiyokoba, Tsukuba, Ibaraki 305-0854, Japan TEL: 029-838-2257 FAX: 029-838-1780